Welcome to T3/Oat



Submit Data

Have data you want to submit to T3/Oat?

Use the data submission forms to upload your data. You can send us data in any format and we will format it into upload templates, check for common errors, and upload it to the database for you.

Submit Data


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    Explore T3/Oat

     Register

    To view most of the data on T3/Oat, you'll first need to create a free account.


     Login

    If you already have an account, login to get full access.



    Explore Experiments in the Search Wizard:




    Trial Summary

    View trait and location summaries from an Experiment:


    or go to the Summarize Trials tool to see all available breeding programs and experiments.




    Annual Summary

    View tables summarizing the genotype and phenotype data added for each breeding program by calendar year.

       Annual Summary Report


    User Guides

         		 

       Read Documentation    Watch Tutorials

    New to T3/Oat?

    View the comprehensive Documentation from the Breedbase team to learn about available features or watch the detailed Video Tutorials.




    Upload Templates

    Blank Upload Templates

    Below are blank upload templates for each data type. The 2nd tab of each template includes more instructions.

    Sample Templates

    Generate a set of sample templates for new accessions, locations, trials, and trait observations. These templates contain all new data in properly formatted templates that can be used to practice uploading each data type to the sandbox.

    Example Templates

    Below are example templates generated for demo wheat trials from a 2020 workshop. You can use these files to see how the templates are properly formatted.

    Submission

    Use the Phenotype Submission Form to submit your data to the curators for inclusion in T3/Oat.

    For more detailed instructions, see the Detailed Phenotype Upload Instructions


    Funding

    Funding is provided by the National Institute for Food and Agriculture (NIFA) and the United States Department of Agriculture (USDA). The current project is funded through NIFA's International Wheat Yield Partnership (IWYP) and part of the Agriculture and Food Research Initiative (AFRI).


    Data Usage Policy

    By using The Triticeae Toolbox, you agree to the following data usage policy:

    In 2009, the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement.


    Citation

    If data on The Triticeae Toolbox was relevant to analyses or findings that you publish, please cite:

    Nicolas Morales, Jean-Luc Jannink, Clay L. Birkett, David J Waring, Lukas A Mueller, et. al., Breedbase: a digital ecosystem for modern plant breeding, G3 Genes|Genomes|Genetics, Volume 12, Issue 7, July 2022, jkac078, https://doi.org/10.1093/g3journal/jkac078

    T3/Oat is open source software and available under the MIT License and may be downloaded from GitHub.



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    Funded By

    T3 is part of the Wheat CAP project, supported by Agriculture and Food Research Initiative Competitive Grant no. 2011-68002-30029 from the USDA National Institute of Food and Agriculture.