Welcome to T3/Oat
T3/Oat is the repository of oat phenotype and genotype data for the Global Oat Genetics Database, a project initiated in January 2014. For more information see the Oat Global website. The database was developed at the website triticeaetoolbox.org/oat. That website was archived in Mar 2020 and all the data was moved to this current site.
Data Usage Policy
The data on this database is shared according to the Toronto agreement. Click here to view the full data usage policy.
Citation
If data on The Triticeae Toolbox was relevant to analyses or findings that you publish, please cite:
Nicolas Morales, Jean-Luc Jannink, Clay L. Birkett, David J Waring, Lukas A Mueller, et. al., Breedbase: a digital ecosystem for modern plant breeding, G3 Genes|Genomes|Genetics, Volume 12, Issue 7, July 2022, jkac078, https://doi.org/10.1093/g3journal/jkac078
If you have data to publish in our database, please submit the data using oat-sandbox.
We're collecing names and emails of those that are interested in attending future T3/Breedbase workshops on various topics such as using Android Field Book, Seedlots, Barcodes, or any other topic you may be interested in learning more about. Fill out the Virual Workshop Interest Form if you may be interested in attending a future workshop. Once we have enough interest in a particular topic, we'll reach out to everyone to schedule a date.
Explore T3/Oat
To view most of the data on T3/Oat, you'll first need to create a free account.
Login
If you already have an account, login to get full access.
Use the Quick Search to find an Accession, Trial, Trait, etc by name:
Explore Experiments in the Search Wizard:
You must first log in to view the lists of experiments...
Annual Summary
View tables summarizing the genotype and phenotype data added for each breeding program by calendar year.
Annual Summary Report  Submit Phenotype Data |
Phenotype data can be submitted to T3/Oat in two ways:
Submitting files directly to us
If you have upload templates that you think are properly formatted or data files that are not formatted as upload templates, you can submit the files directly to use for inclusion in the production site by submitting them to us through the Phenotype Submission Form.
Phenotype Submission FormUsing the Sandbox
When using the sandbox, you create upload templates that contain the trial information. Then, you upload those templates to the Sandbox to check for any errors. When the trial has been successfully added you can use the Submit Trial function to submit the trial directly to us for inclusion in the production site. Visit the T3/Oat Sandbox for more information.
Visit the T3/Oat Sandbox Submit Genotype Data |
If you have genotype data you would like to submit to T3/Oat, please use the Genotype Submission Form. This will ask you some questions about the data and then you can upload a VCF file of the data. We'll make sure the file is properly formatted, the correct genotype protocol is used for the data, and add the genotype data to the database.
Genotype Submission Form User Guides |
New to T3/Oat?
View the comprehensive Documentation from the Breedbase team to learn about available features or watch the detailed Video Tutorials.
T3/Oat is open source software and available under the MIT License and may be downloaded from GitHub.
Working
