Welcome to the New T3/Oat
T3/Oat is the repository of oat phenotype and genotype data for the Global Oat Genetics Database, a project initiated in January 2014 by the following investigators. For more information see the Oat Global website.
• Gabe Gusmini (PepsiCo), • Joe Lutz (General Mills), • Bruce Roskens (Grain Millers), • Nicholas Tinker (AAFC), • Kay Simmons, Jack Okamuro, Jose Costa, Jean-Luc Jannink, and Gerard Lazo (USDA-ARS)
Leave Feedback
The New T3/Oat is the next evolution of The Triticeae Toolbox (T3). We are in the process of transitioning all of T3's data and tools to this new system. We encourage you to leave feedback about feature improvements, missing tools, and/or any ideas you may have to improve the site.
PepsiCo Oat Genome
June 23, 2020
Scab Forum Presentation
Dec 9, 2019
The presentation (with step-by-step screenshots of the demos) of T3/Breedbase given at the 2019 Wheat & Barley Scab Forum can be found here.
Accessions Loaded
Dec 16, 2019
Accession entries have been created for all ~24,000 accessions that were in T3/Classic. Accessions have associated breeding programs, synonyms and GRIN ID numbers.
Explore T3/Oat
To view most of the data on T3/Oat, you'll first need to create a free account.
Login
If you already have an account, login to get full access.
Use the Search Wizard to explore the database using various types of metadata.
Alternatively, you can search specifically for Accessions, Trials, Traits, Genoptyping Projects, or Markers
Submit Phenotype Data
Phenotype data can be submitted to T3/Oat in two ways:
Using the Sandbox
When using the sandbox, you create upload templates that contain the trial information. Then, you upload those templates to the Sandbox to check for any errors. When the trial has been successfully added you can use the Submit Trial function to submit the trial directly to us for inclusion in the production site. Visit the T3/Oat Sandbox for more information.
Visit the T3/Oat SandboxSubmitting files directly to us
If you have upload templates that you think are properly formatted or data files that are not formatted as upload templates, you can submit the files directly to use for inclusion in the production site by submitting them to us through the Phenotype Submission Form.
Phenotype Submission FormUser Guides
Read DocumentationNew to T3/Oat?
View the Documentation to learn about available features.
Blake, V., Birkett, C.L., Matthews, D.E., Hane, D., Bradbury, P., Jannink, J. 2015. The Triticeae Toolbox: Combining Phenotype and Genotype Data to Advance Small-Grains Breeding. The Plant Genome. doi: 10.3835/PlantGenome2014.12.0099.
T3/Oat is open source software and available under the MIT License and may be downloaded from GitHub.
Working
