Welcome to T3/Oat

T3/Oat is the repository of oat phenotype and genotype data for the Global Oat Genetics Database, a project initiated in January 2014. For more information see the Oat Global website. The database was developed at the website triticeaetoolbox.org/oat. That website was archived in Mar 2020 and all the data was moved to this current site.


Data Usage Policy

The data on this database is shared according to the Toronto agreement. Click here to view the full data usage policy.


Citation

If data on The Triticeae Toolbox was relevant to analyses or findings that you publish, please cite:

Nicolas Morales, Jean-Luc Jannink, Clay L. Birkett, David J Waring, Lukas A Mueller, et. al., Breedbase: a digital ecosystem for modern plant breeding, G3 Genes|Genomes|Genetics, Volume 12, Issue 7, July 2022, jkac078, https://doi.org/10.1093/g3journal/jkac078

If you have data to publish in our database, please submit the data using oat-sandbox.


Future Workshops

We're collecing names and emails of those that are interested in attending future T3/Breedbase workshops on various topics such as using Android Field Book, Seedlots, Barcodes, or any other topic you may be interested in learning more about. Fill out the Virual Workshop Interest Form if you may be interested in attending a future workshop. Once we have enough interest in a particular topic, we'll reach out to everyone to schedule a date.



Updates


Explore T3/Oat

 Register

To view most of the data on T3/Oat, you'll first need to create a free account.


 Login

If you already have an account, login to get full access.

Use the Quick Search to find an Accession, Trial, Trait, etc by name:



Explore Experiments in the Search Wizard:

You must first log in to view the lists of experiments...




Annual Summary

View tables summarizing the genotype and phenotype data added for each breeding program by calendar year.

   Annual Summary Report


Submit Phenotype Data

 



Submit Genotype Data

 



User Guides

 



Upload Templates

Blank Upload Templates

Below are blank upload templates for each data type.

Sample Templates

Generate a set of sample templates for new accessions, locations, trials, and trait observations. These templates contain all new data in properly formatted templates that can be used to practice uploading each data type to the sandbox.

Example Templates

Below are example templates generated for demo wheat trials from a 2020 workshop. You can use these files to see how the templates are properly formatted.


Submission

Use the Phenotype Submission Form to submit your data to the curators for inclusion in T3/Oat.


For more detailed instructions, see the Detailed Phenotype Upload Instructions


T3/Oat is open source software and available under the MIT License and may be downloaded from GitHub.