Welcome to T3/Oat

T3/Oat archive site last updated March 2020

T3/Oat is the repository of oat phenotype and genotype data for the Global Oat Genetics Database, a project initiated in January 2014. For more information see the Oat Global website.



Data Usage Policy

The data on this database is shared according to the Toronto agreement. Click here to view the full data usage policy.


Citation

If data on The Triticeae Toolbox was relevant to analyses or findings that you publish, please cite:

Blake, V., Birkett, C.L., Matthews, D.E., Hane, D., Bradbury, P., Jannink, J. 2016. The Triticeae Toolbox: Combining Phenotype and Genotype Data to Advance Small-Grains Breeding. The Plant Genome. doi: 10.3835/PlantGenome2014.12.0099.




News

PepsiCo v2 assembly

May, 2021

Speaking of Oats...

February 26, 2020

T3 gave the January Speaking of Oats webinar organized by Oat Global and the Oat Newsletter, where we discussed practical applications of T3/Breedbase for the oat community and an overview of adding and extracting data from the new database.

A video recording of the webinar is now available on YouTube and a transcript of the Q&A session (PDF) is available from the Oat Newsletter.

Breedbase Workshop Notes & Videos

September 10, 2020

T3 hosted a practical remote workshop demonstrating the process of uploading field trial data to the database. Notes from that workshop, which include step-by-step instructions on how to upload a sample dataset, are now available.

Video recordings of the workshop are available on the Breedbase YouTube Channel.

Scab Forum Presentation

Dec 9, 2019

The presentation (with step-by-step screenshots of the demos) of T3/Breedbase given at the 2019 Wheat & Barley Scab Forum can be found here.

Accessions Loaded

Dec 16, 2019

Accession entries have been created for all ~24,000 accessions that were in T3/Classic. Accessions have associated breeding programs, synonyms and GRIN ID numbers.



Explore T3/Oat

 New User

To view most of the data on T3/Oat, you'll first need to create a free account.


 Login

If you already have an account, login to get full access.

Use the Search Wizard to explore the database or search individual data types:



Explore Experiments in the Search Wizard:

You must first log in to view the lists of experiments...




Submit Phenotype Data

Phenotype data can be submitted to T3/Oat in two ways:

Using the Sandbox

When using the sandbox, you create upload templates that contain the trial information. Then, you upload those templates to the Sandbox to check for any errors. When the trial has been successfully added you can use the Submit Trial function to submit the trial directly to us for inclusion in the production site. Visit the T3/Oat Sandbox for more information.

   Visit the T3/Oat Sandbox

Submitting files directly to us

If you have upload templates that you think are properly formatted or data files that are not formatted as upload templates, you can submit the files directly to use for inclusion in the production site by submitting them to us through the Phenotype Submission Form.

   Phenotype Submission Form


Submit Genotype Data

Please Contact Us if you have genotype data you would like to submit to T3/Oat.




User Guides

New to T3/Oat?

View the comprehensive Documentation from the Breedbase team to learn about available features or watch the detailed Video Tutorials.





T3/Oat is open source software and available under the MIT License and may be downloaded from GitHub.