T3/Oat

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T3/Oat

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- Breeder Tools
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- Selection Index
- Population Structure
- Clustering
- GWAS
- Accession Usage
- Compare Trials
- Summarize Trials
- Sequence Analysis
- BLAST
Maps
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Breeding Program Uniform Oat Performance Nursery

Product Profiles

View product profiles

Product Profile Name	Scope	Trait	Submitter	Date (Y-M-D)

Locations

View locations related to this breeding program

Location Info

Id	Name	Abbreviation	Country	Type	Altitude(m)	Trials	Nearest NOAA Station ID

Projects

View field trials, genotyping experiments, crossing experiments

Go To Manage Trials

Go To Manage Genotyping Plates

Go To Manage Crosses

Field Trials

Trial name	Description

Genotyping Plates

Genotyping Plate Name	Description

Crossing Experiments

Crossing Experiment Name	Description

Stocks

View accessions, crosses, seedlots

Go To Manage Accessions

Go To Manage Seedlots

Accessions

Accession name	Description

Crosses

Cross Unique ID	Female Parent	Male Parent	Cross Type

Seedlots

Seedlot Name	Content	Content Type

Phenotype Summary

View phenotype summary and histogram

Raw Data Statistics

Trait	Mean	Min	Max	Std Dev	CV	Count	Histogram

Raw Data Histogram

Select:

To create product profile template, please provide file name and a list of traits

Template File Name:

Select a List of Traits:

Product Profile Template Created

The product profile template was created successfully.

Download Template

Upload Product Profile

Intro
File format
Upload Product Profile

Product Profile
- Product profiles can be stored in the database for downstream variety selection process for each breeding program.
- To facilitate data curation, targeted trait names and trait IDs can be retrieved directly from the database.
- Please use the product profile template generated from our database to fill out product profile details.
- You can find the link for creating the template in the product profile section, simply provide a file name and a list of traits.
- Instructions for filling out the form are on the next page

Make sure your file matches the correct file format

Instructions for Product Profile Spreadsheet

Provide basic information about the product profile and upload your file

Breeding Program:

Product Profile Name:

Scope:

Upload File (.xls):

Finished! Your profile is now in the database

The profile file was uploaded successfully

Finished! Your profile is now in the database

The profile file was uploaded successfully

Upload Profile File Error

Instructions for Product Profile Spreadsheet

Product Profile Template

Product profile template is an Excel file (.xls format)
After filling out the product profile details, please also save the spreadsheet in the .xls format
Please do not modify or delete any column header in the template.

Header:

Trait Name

Target Value

Benchmark Variety

Performance (equal, smaller, larger)

Weight

Trait Type

Required columns:

Trait Name: The template already contains trait names based on your trait list
Target Value or Benchmark Variety: Please indicates either a target value or a benchmark variety for each targeted trait. Benchmark variety must exist in the database.
Performance: Please specifies the performance of each targeted trait (equal, smaller or larger) compared to the target value or benchmark variety

Optional columns:

Weight: Default is 1
Trait Type: e.g. basic trait, value-added trait

Your Lists

Public Lists

List Contents

List Validation Report: Failed

Elements not found:

Optional: Add Missing Accessions to A List

Mismatched case

Click the Adjust Case button to align the case in the list with what is in the database.

Multiple mismatched case

Items listed here have mulitple case mismatches and must be fixed manually. If accessions need to be merged, contact the database directly.

List elements matching a synonym

Multiple synonym matches

Multiple synonym matches have to be resolved manually. Contact database administrators if necessary.

Fuzzy Search Results

Synonym Search Results

Create a New List from Unique Names:

Available Seedlots

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Create a New List from Selected Seedlots:

Manage Seedlots

Your Datasets

Public Datasets

Dataset Contents

Dataset Validation Failed

Elements not found:

Your Calendar

Having trouble viewing events on the calendar?
Are you associated with the breeding program you are interested in viewing?

Calendar Permissions

Add New Event

Project:

Event Type:

Start:

End:

Description:

Web URL:

http://www.

Event Info

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

Edit Event

Project:

Event Type:

Start:

End:

Description:

Web URL:

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Email Address

Reset Password

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Email Address

Create New User

Notice

Before creating a new account, please check if you already have an account using the directory search.
A link will be emailed to you. Please click on it to activate the account.
All fields are required.

First Name:

Last Name:

Breeding Program(s):

Username:

Username must be at least 7 characters long.

Password:

Password must be at least 7 characters long and different from your username.

Confirm Password:

Password must be at least 7 characters long and different from your username.

Email Address:

An email will be sent to this address requiring you to confirm its receipt to activate your account.